Revealing biomolecular insights never before available

Molecular mechanisms are at the heart of understanding biology​

All biological processes ultimately take place at the molecular level, all diseases arise at this level, and practically all drugs act at this level. However, many life science and tools that are used today to approximate and extract molecular function such as structural biology, bulk functional assays, cell imaging, and localization assays, give either detailed structural or functional information - but rarely both.

Unable to observe molecular processes in real time, they often fail to reveal crucial mechanistic details of the molecular factors at play. This lack of direct observation of the underlying dynamic processes often results in ambiguous data, not suited to deliver clear insights.

Dynamic Single-Molecule, the missing link

What if you could measure molecular properties and interactions while simultaneously recording and showing you the processes in real-time? A technology that can reveal the crucial and dynamic interactions taking place at the molecular level and gives you direct proof of the mechanisms involved. A tool that can provide an understanding of the root of disease development at the molecular level and accelerate therapeutic breakthroughs.

Dynamic Single-Molecule combines live visualization, manipulation, and force measurement at the smallest molecular scale, leads to single-molecule imaging and base-pair resolution measurements of the interactions between biomolecules. Taken together, this provides – for the first time – the crucial dynamic and functional mechanistic information that is complementary to molecular structure, bulk functional assays, and cell imaging.
Gain unprecedented insights into the complex mechanistic details of interactions​
Correlate structure and function like no other technology can do
Get started up in no time through the easy to use workflow and solutions
Workflow

The Dynamic Single-Molecule workflow

Let’s take you through the various steps involved in an experiment
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Applications

Explore your research application

Explore what Dynamic Single-Molecule can mean for your field of interest
RNA Translation

Study and visualize RNA translation mechanisms at the nanoscale

Use Dynamic Single-Molecule to obtain the full understanding of translation mechanisms
Available case studies:
Investigation of ribosome activity and states
Case study
Measurement of riboswitch conformational changes
Case study
Explore RNA Translation
DNA Replication

Study and visualize DNA replication mechanisms at the nanoscale

Use Dynamic Single-Molecule to obtain the full understanding of replication mechanisms
Available case studies:
The replication machinery: Identify key players and their diverse roles
Case study
Shixin Liu, PhD
Real-time insights into origin recognition and replisome formation
Case study
Nynke Dekker, PhD
Replication in context: Uncover mechanisms ensuring replication fidelity and genome stability
Case study
Stephen West, PhD
Explore DNA Replication
DNA Transcription

Study and visualize DNA transcription mechanisms at the nanoscale

Use Dynamic Single-Molecule to obtain the full understanding of transcription mechanisms
Available case studies:
Real-time observation of DNA exonuclease dynamics at base-pair level
Case study
Explore DNA Transcription
DNA Repair

Study and visualize DNA replication processes at the nanoscale

Use Dynamic Single-Molecule to obtain the full understanding of repair mechanisms
Available case studies:
Characterize the (dis-)assembly kinetics of repair complexes based on single-molecule real-time data
Case study
Ben Van Houten, PhD
Directly observing molecular search and repair mechanisms delivers unexpected insights
Case study
Ingrid Tessmer, PhD
Pulling on individual molecules reveals how biomolecular condensation physically prevents DNA end disjunction
Case study
Simon Alberti, PhD
Explore DNA Repair
DNA Organization

Mechanisms and roles of chromatin organization – decipher the epigenetic code

Available case studies:
Quantify SMC activity, conformation and interactions at the molecular level
Case study
Johannes Stigler, PhD
Follow chromatin remodeler activity in real-time
Case study
Taekjip Ha, PhD
Use the force: Quantify nucleosome stability and cross-linking
Case study
Mark Williams, PhD
Explore DNA Organization
DNA/RNA Structure

Reveal the structural dynamics of RNA & DNA in real time

Use Dynamic Single-Molecule to obtain the full understanding of DNA/RNA structure
Available case studies:
Uncover structural dynamics in telomeric RNA for cancer research
Case study
Bo Sun, PhD
Investigate RNA misfolding in neurodegenerative disorders
Case study
Christian Kaiser, PhD
Reveal protein-RNA interactions critical for viral replication
Case study
Neva Caliskan, PhD
Explore DNA/RNA Structure
DNA Editing

Study and visualize DNA editing mechanisms on the nanoscale

Use Dynamic Single-Molecule to obtain the full understanding of editing mechanisms
Available case studies:
Understand off-target activities of Cas for safer gene editing
Case study
David Rueda, PhD
Real-time insights into gene editing mechanisms
Case study
Bo Sun, PhD
Explore DNA Editing
Mechanobiology

Uncover mechanical principles of cellular function at the molecular level

Available case studies:
Unravel mechano-chemical cues in cell division
Case study
David Barford, PhD
Gain unique access to the physical principles governing chromatin organization and compaction
Case study
Gijs Wuite, PhD
Role of membranes and the cytoskeleton in force response and propagation
Case study
Shannon Yan, PhD
Explore Mechanobiology
Phase Separation

From fundamental mechanism to biological function – explore biomolecular condensates across scales

Available case studies:
Explore the fundamental mechanisms driving and regulating biomolecular condensation
Case study
Priya Banerjee, PhD
Biological function of condensates
Case study
Simon Alberti, PhD
Shed light on the role of biomolecular condensation in disease
Case study
He Huang, PhD
Explore Phase Separation
Cytoskeletal Structure and Transport

Study cytoskeletal motors in real-time at the nanoscale

Available case studies:
Investigation of motor protein stepping mechanics along cytoskeletal filaments
Case study
Stepping of filaments and motors at the surface
Case study
Force-extension, manipulation, and visualization of polymers and protein filaments
Case study
Sarah Köster, PhD
Explore Cytoskeletal Structure and Transport
Protein Folding

Study protein folding and conformational dynamics at the nanoscale

Available case studies:
Explore how structural motifs determine protein folding and function
Case study
Johannes Stigler, PhD
Uncover unknown mechanisms that modulate protein folding
Case study
Sander Tans, PhD
Conformational dynamics of membrane proteins: the key to deciphering cellular signaling and transport
Case study
Kasia Tych, PhD
Explore Protein Folding
Solutions

C-Trap

Biomolecular interactions re-imagined

The C-Trap® provides the world’s first dynamic single-molecule microscope to allow simultaneous manipulation and visualization of single-molecule interactions in real time.

Discover the C-Trap

Publications

Understand the key insights by reading up on our latest publications

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E. coli RecB Nuclease Domain Regulates RecBCD Helicase Activity but not Single Stranded DNA Translocase Activity

Fazio, N. et al.
2024
Journal of Molecular Biology
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DNA-Binding proteins
Publication
Text Link

Rapid Long-distance Migration of RPA on Single Stranded DNA Occurs Through Intersegmental Transfer Utilizing Multivalent Interactions

Sushil Pangeni et al.,
2024
Journal of Molecular Biology
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DNA-Binding proteins
Publication
Text Link

Single-molecule analysis of purified proteins and nuclear extracts: Insights from 8-oxoguanine glycosylase 1

Schaich, M.A. et al.,
2024
DNA Repair
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DNA-Binding proteins
Publication

Relevant resources

Learn as much as you can by reading up on our application notes or marathoning our webinars.

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New Insights in Chromosome Organization: Single Molecule Analysis of Eukaryotic SMC Complexes

New Insights in Chromosome Organization: Single Molecule Analysis of Eukaryotic SMC Complexes

Webinar
March 31, 2025
01-01-20

Structural Maintenance of Chromosome (SMC) complexes, cohesin, condensin and Smc5/6, play a fundamental role in genome organization, facilitating chromosome compaction, segregation, and DNA repair. Despite their essential functions, the mechanisms by which the complexes interact with different DNA substrates and influence topological transitions remain not fully understood. Using the LUMICKS C-Trap, we have employed single-molecule approaches to analyze the behavior of purified SMC complexes, focusing on yeast cohesin and human SMC5/6, on different DNA substrates, including double-stranded (dsDNA) and single-stranded DNA (ssDNA). Additionally, we have used a quadrupole optical trap to bridging by SMC complexes and their effect on DNA decatenation by Topoisomerase IIα (Top2A). These findings provide new insights into the fundamental properties and requirements of cohesin and Smc5/6’s interaction with DNA substrates, as well as their ability to bridge two independent DNAs.

Text Link
Deciphering the Dynamic Mechanisms of Thymine DNA Glycosylase (TDG) in DNA Repair

Deciphering the Dynamic Mechanisms of Thymine DNA Glycosylase (TDG) in DNA Repair

Scientific update
December 5, 2024
01-01-20

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Golden Gate meets C-Trap: A powerful combination for unprecedented molecular insights

Golden Gate meets C-Trap: A powerful combination for unprecedented molecular insights

Application note
December 18, 2024
01-01-20

Precisely manipulating genetic material at the single molecule level is gaining importance across life sciences – and so do the tools that allow researchers to do exactly that. The C-Trap system combines single molecule fluorescence microscopy with optical tweezers to manipulate DNA, allowing researchers to directly observe and track molecular events as they occur. Designing and creating specific DNA constructs is crucial for maximizing the potential of single molecule studies. In this application note we introduce the powerful combination of cutting edge biochemistry and single-molecule visualization methods to increase throughput and maximize the results gained from each individual measurement.

C-Trap Product Brochure

C-Trap Product Brochure

Brochure
February 28, 2025
01-01-20

Connect with us

Stop by at a conference or user event, or tune in for a live webinar!

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AACR 2025

AACR 2025

Conference
April 18, 2025
01-01-20

Let’s get in touch

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